Multispecies phase diagram of biofilm architectures reveals biophysical principles of biofilm development

Hannah Jeckel^{1, 2}, Francisco Diaz-Pascual³, Dominic J Skinner⁴, Boya Song⁴, Eva Jimenez-Siebert², Eric Jelli³, Sanika Vaidya³, Jörn Dunkel⁴, and Knut Drescher²

¹Department of Physics, Philipps-Universität Marburg, 35032 Marburg, Germany
²Biozentrum, University of Basel, 4056 Basel, Switzerland
³Max Planck Institute for Terrestrial Microbiology, 35043 Marburg, Germany
⁴Department of Mathematics, Massachusetts Institute of Technology, 02139 Cambridge, MA, USA

[Link to paper (bioRxiv 2022)]

Datasets from article:

Each table contains xyz coordinates of each cell in a biofilm. The first column contains x-, the second y-, the third z-coordinates. All coordinates are listed in µm. Coordinates for different biofilms are stored in different tabs of the file.

Data from Escherichia coli biofilms: file.

Data from Pseudomonas aeruginosa biofilms: file.

Data from Salmonella enterica biofilms: file.

Data from Vibrio cholerae WT biofilms: file.

Data from Vibrio cholerae mutant biofilms: file.

Data from simulated biofilms: file.